FoxSeq Pathogen Surveillance Technology

FoxSeq is a proprietary cloud-based software platform developed by BioInfoExperts. FoxSeq reduces the complexity of incorporating pathogen sequencing into healthcare workflows.
You provide the sample; we deliver actionable data.

FoxSeq was developed through funding from the National Science Foundation Small Business Innovation Research program and is the recipient of the AWS Diagnostic Development Initiative Award because of its innovative approach to accelerating research and advancing the collective understanding of pathogens. 

Where FoxSeq is Used

Clinical

FoxSeq seamlessly integrates pathogen genomic data with patient information to detect hidden patterns and correlations to improve patient care.

Public Health

FoxSeq imports data from multiple sources and provides granular level permissions enabling collaboration across departments/agencies while ensuring data protection.

Industry

FoxSeq visualizations are customized to meet the needs of Occupational Health, including geolocation and enhanced reporting.

Why FoxSeq

Visualizations

Intuitive and interactive graphical dashboards encourage hypothesis-driven investigation

Analysis

Automated pipelines for processing whole genome sequence data for viruses, bacteria and fungi

Security

Data uploads via user-authenticated web portal and secure storage in HIPAA-compliant platform

data, database, storage

Storage

Database housing of results; terabytes available for long-term data storage

Flexibility

Integration of multiple data types, including genetic, clinical and geo-located demographic data

SARS-CoV-2​

Specific pipelines and visualizations designed for COVID-19 variant tracking including mutation identification and lineage typing

group

Support

Bioinformatics and software support team provide on-going training, maintenance, and upgrades

Collaboration

Multi-tenancy architecture and multiple levels of password protected access

Customization

Visualizations, reports, and dashboards tailored to our customers’ specific needs

What Our Customers Say

"BioInfoExperts empowers my team to disseminate information to health department leadership, internal stakeholders, and contact tracers quickly, easily, and in a format that anyone can understand—not just scientists.”
Dr. Amy Feehan, Ph.D.
Clinical Research Scientist, Department of Infectious Disease, at Ochsner Health System
“For our high-throughput sequencing facility, FoxSeq automatically processes and displays all of the results that I want to see on a private web browser. We can easily interpret, visualize and search our data for trends in a way that is significantly improved over other commercially available products.”
Judy S. Crabtree, Ph.D
Precision Medicine Program and Director, School of Medicine Genomics Core at LSU Health Science Center, New Orleans

Select Pathogens of Interest

SARS-CoV-2
SARS-CoV-2
PSEUDOMONAS
PSEUDOMONAS
STAPHYLOCCUS
STAPHYLOCCUS
ESCHERICHIA
ESCHERICHIA
KLEBSIELLA
KLEBSIELLA
ENTEROBACTER
ENTEROBACTER

FoxSeq Customers